Publications

117 entries « 3 of 3 »

2012

LG, Garcia; KD, McMahon; M, Martinez-Garcia; A, Srivastava; A, Sczyrba; R, Stepanauskas; HP, Grossart; T, Woyke; F, Warnecke

Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton Journal Article

In: The ISME Journal, vol. 7, pp. 137-147, 2012.

Abstract | Links | BibTeX

M, Martinez-Garcia; DM, Brazel; BK, Swan; C, Arnosti; PSG, Chain; KG, Reitenga; G, Xie; NJ, Poulton; M, Lluesma Gomez; DED, Masland; B, Thompson; WK, Bellows; K, Ziervogel; CC, Lo; S, Ahmed; CD, Gleasner; CJ, Detter; R, Stepanauskas

Capturing single cell genomes of active polysaccharide degraders: An unexpected contribution of Verrucomicrobia Journal Article

In: PLoS ONE, vol. 7, no. 4, pp. e35314, 2012.

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2011

R, Ghai; L, Pasic; AB, Fernandez; AB, Martin-Cuadrado; CM, Mizuno; KD, McMahon; RT, Papke; R, Stepanauskas; B, Rodriguez-Brito; F, Rohwer; C, Sanchez-Porro; A, Ventosa; F, Rodriguez-Valera

New abundant microbial groups in aquatic hypersaline environments Journal Article

In: Scientific Report, vol. 1, no. 135, 2011.

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T, Woyke; A, Sczyrba; J, Lee; C, Rinke; D, Tighe; S, Clingenpeel; R, Malmstrom; R, Stepanauskas; J-F, Cheng

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification Journal Article

In: PLoS ONE, vol. 6, no. 10, pp. e26161, 2011.

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M, Martinez-Garcia; DM, Brazel; N, Poulton; BK, Swan; M, Lluesma Gomez; D, Masland; ME, Sieracki; R, Stepanauskas

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing Journal Article

In: The ISME Journal, vol. 6, pp. 703-707, 2011.

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Engel P,; R, Stepanauskas; A, Moran N

Hidden Diversity in Honey Bee Gut Symbionts Detected by Single-Cell Genomics Journal Article

In: PLOS Genetics, vol. 10, no. 9, pp. 1004596, 2011.

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BK, Swan; M, Martinez-Garcia; CM, Preston; A, Sczyrba; T, Woyke; D, Lamy; T, Reinthaler; NJ, Poulton; D, Masland; M, Lluesma Gomez; ME, Sieracki; EF, DeLong; GJ, Herndl; R, Stepanauskas

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean Journal Article

In: Science, vol. 333, no. 6047, pp. 1296-1300, 2011.

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J, Martinez-Martinez; N, Poulton; R, Stepanauskas; M, Sieracki; WH, Wilson

Targeted Sorting of Single Virus-Infected Cells of the Coccolithophore Emiliania huxleyi Journal Article

In: PLoS ONE, vol. 6, no. 7, pp. e22520, 2011.

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M, Martinez-Garcia; BK, Swan; NJ, Poulton; M, Lluesma Gomez; D, Masland; ME, Sieracki; R, Stepanauskas

High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton Journal Article

In: The ISME Journal, vol. 6, pp. 113-123, 2011.

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HS, Yoon; DC, Price; R, Stepanauskas; VD, Rajah; ME, Sieracki; WH, Wilson; EC, Yang; S, Duffy; D, Bhattacharya

Single-cell genomics reveals organismal interactions in uncultivated marine protists Journal Article

In: Science, vol. 332, no. 6030, pp. 714-717, 2011.

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EJ, Fleming; AE, Langdon; M, Martinez-Garcia; R, Stepanauskas; N, Poulton; D, Masland; D, Emerson

What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH Journal Article

In: PLoS ONE, vol. 6, no. 3, pp. e17769, 2011.

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M, Hess; A, Sczyrba; R, Egan; TW, Kim; H, Chokhawala; G, Schroth; S, Luo; DS, Clark; F, Chen; T, Zhang; RI, Mackie; LA, Pennacchio; SG, Tringe; A, Visel; T, Woyke; Z, Wang; EM, Rubin

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen Journal Article

In: Science, vol. 331, no. 6016, pp. 463-467, 2011.

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2010

JL, Heywood; ME, Sieracki; W, Bellows; NJ, Poulton; R, Stepanauskas

Capturing diversity of marine heterotrophic protists: one cell at a time Journal Article

In: The ISME Journal, vol. 5, pp. 674-684, 2010.

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A, Reyes-Prieto; HS, Yoon; A, Moustafa; EC, Yang; RA, Andersen; SM, Boo; T, Nakayama; KI, Ishida; D, Bhattacharya

Differential gene retention in plastids of common recent origin Journal Article

In: Molecular biology and evolution, vol. 27, no. 7, pp. 1530-1537, 2010.

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2009

T, Woyke; G, Xie; A, Copeland; JM, Gonzalez; C, Han; H, Kiss; J, Saw; P, Senin; C, Yang; S, Chatterji; J-F, Cheng; JA, Eisen; ME, Sieracki; R, Stepanauskas

Assembling the marine metagenome, one cell at a time Journal Article

In: PLoS ONE, vol. 4, no. 4, pp. e5299, 2009.

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2008

T, Ishoey; T, Woyke; R, Stepanauskas; M, Novotny; RS, Lasken

Genomic sequencing of single microbial cells from environmental samples Journal Article

In: Current Opinion in Microbiology, vol. 11, no. 3, pp. 198-204, 2008.

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2007

R, Stepanauskas; ME, Sieracki

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time Journal Article

In: PNAS, vol. 104, no. 21, pp. 9052-9057, 2007.

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117 entries « 3 of 3 »